INVGA is a Cytoscape plugin that efficiently computes network-, node- and dyad-level topological parameters for undirected networks loaded into Cytoscape from SIF formatted files. The node- and dyad- level parameters are:
all path
shortest path
critical path
max flow
topological coefficient.
The network parameters include:
mean shortest path
degree distribution
average number of interaction partners
clustering coefficient
diameter of graph
degree centrality
Cite INVGA
Ying Tang, David M. Carbonetta, and Sachin Shetty, “Development of an Integrated Network Visualization and Graph Analysis Tool for Biological Network,” International Journal of Computational Biology and Drug Design, 2012.
Acknowledgements
This project is supported in part by the National Science Foundation under Grants No. 0935089 and 1041306. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the investigator(s) and do not necessarily reflect the views of the National Science Foundation.
